PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011190m
Common NameCARUB_v10011190mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 280aa    MW: 31735.8 Da    PI: 4.806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011190mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.8e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed++l+  +++ G ++W++ ++  g+ R++k+c++rw +yl
  Carubv10011190m 16 RGPWSQDEDLKLISFIHKSGHENWRSLPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP

2Myb_DNA-binding52.79.8e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
  Carubv10011190m  69 RGNFSAEEEETIIKLHQSFGNK-WSKIASKLP-GRTDNEIKNVWHTHL 114
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-23766IPR009057Homeodomain-like
PROSITE profilePS5129413.5681163IPR017930Myb domain
SuperFamilySSF466893.41E-2814110IPR009057Homeodomain-like
SMARTSM007175.4E-121565IPR001005SANT/Myb domain
PfamPF002492.5E-141663IPR001005SANT/Myb domain
CDDcd001671.31E-81863No hitNo description
PROSITE profilePS5129425.46564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2767118IPR009057Homeodomain-like
SMARTSM007175.4E-1568116IPR001005SANT/Myb domain
PfamPF002493.7E-1569114IPR001005SANT/Myb domain
CDDcd001673.63E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGKGRAPCCD KTKVKRGPWS QDEDLKLISF IHKSGHENWR SLPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSAEEEETI IKLHQSFGNK WSKIASKLPG RTDNEIKNVW HTHLKKRLSS  120
DTTNLNADEA ASKDSLNEAE TSQESSPNAS MSFAGSNISS REEDDAQISQ AFEHIQTYSD  180
FTGMLQEVDK PELQEIPFDL DHDIWSFIDG SDSFQQLENS WSSRATQESE GDEIEKWFKH  240
LESELGLEEN DNQQHEQGTT DGEESSSSSL LEGYKLLIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24161207110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934590.0AB493459.1 Arabidopsis thaliana At1g16490 mRNA for hypothetical protein, partial cds, clone: RAAt1g16490.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304479.10.0hypothetical protein CARUB_v10011190mg
SwissprotP200247e-70MYB1_MAIZE; Myb-related protein Zm1
TrEMBLR0GN610.0R0GN61_9BRAS; Uncharacterized protein
STRINGAT1G16490.11e-167(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.11e-166myb domain protein 58